Protein Digestion and Absorption

Olivia Anderson

Learning Objectives

Digestion

Stomach

Enzymatic digestion of protein begins in the stomach. Hydrochloric acid (HCl), secreted by parietal cells, initiates protein denaturation by lowering the pH. This unfolds the quaternary, tertiary, and secondary structures, disrupting hydrogen and electrostatic bonds but leaving peptide bonds intact.

HCl also activates pepsinogen (from chief cells) into pepsin, which functions as an endopeptidase—hydrolyzing interior peptide bonds, particularly adjacent to hydrophobic or aromatic amino acids.

The result: linear polypeptide chains and oligopeptides.

Small Intestine

As chyme enters the small intestine, hormones secretin and CCK slow gastric digestion and stimulate pancreatic juice release. This juice contains bicarbonate and zymogens including:

Enteropeptidase activates trypsinogen to trypsin, which then activates the other zymogens.

Chymotrypsin targets peptide bonds next to tyrosine, phenylalanine, or tryptophan (large neutral amino acids).

Carboxypeptidase is an exopeptidase that cleaves from the C-terminal, producing free amino acids and shorter peptides.

Brush border enzymes include:

Absorption

Small Intestine

Digestion products—free amino acids, dipeptides, and tripeptides—must cross:

Most absorption happens in the lower duodenum and upper jejunum. About 70% of apical absorption occurs as di/tripeptides via the PEPT1 transporter, co-transporting with H+ ions.

To maintain gradients:

Free amino acids use carrier-mediated systems. Their transport is influenced by:

Selected Free Amino Acid Transport Systems (Apical Membrane)
System Target Amino Acids
L System Branched-chain and aromatic AAs
X- System Acidic AAs
B0,+ System Neutral and basic AAs
ASC System Small neutral AAs

Inside the enterocyte, peptides are hydrolyzed to amino acids. These are then transported across the basolateral membrane into capillaries, ultimately reaching the liver via the portal vein.

Basolateral Membrane Transport Systems
System Notes
LAT1 Large neutral AAs
y+LAT1 Basic AAs
TAT1 Aromatic AAs
SNAT Sodium-dependent neutral AAs

Not all amino acids enter circulation—some are retained for:

Large Intestine

About 10–20 g of amino acids escape absorption daily. Gut bacteria use these for growth, and the rest are excreted in feces.